PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00774.1.g00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 283aa    MW: 30796.6 Da    PI: 8.2477
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00774.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.97.4e-29121322103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT......TEEE---SSBTTTT.. CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY......gFkkvkdeekksks.. 74 
                                   F+ k+y ++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+Y       F+ ++  ++++++  
  Zmw_sc00774.1.g00180.1.am.mk  12 FVWKTYMMVEDPGTDGVIGWGRANNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYvrppalRFRFIRLLHAQNSEvf 92 
                                   9********************999***********************************7776666999999999877788 PP

                                   ...........XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 ...........kekiweFkhksFkkgkkellekikrkkse 103
                                              +++ weF+h sF +g+++ll++i r+ s+
  Zmw_sc00774.1.g00180.1.am.mk  93 rstdqqgfrkvDPDRWEFAHASFLRGQTHLLRNIVRRGSS 132
                                   8888777665449***********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-398129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-349129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-2810129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.4E-121235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2512129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-125062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-126375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAASGCGAAA PFVWKTYMMV EDPGTDGVIG WGRANNSFVV ADPFVFSQTL LPAHFKHNNF  60
SSFVRQLNTY VRPPALRFRF IRLLHAQNSE VFRSTDQQGF RKVDPDRWEF AHASFLRGQT  120
HLLRNIVRRG SSAGNGGGKR AKDALPAADG DDMAMVTTEV VRLKQEQRAI DDRVASMWRR  180
VQETERRPKQ MLAFLLKVVG DRDRLHRLVG DTAAAPDARG NEAAAEVGGE KRARLLLDGD  240
VGAFGPDAAD FAGFYGGGED ALGDVAVDAG GGCSFAFGVD TGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-22512917129Heat shock factor protein 1
5d5v_B8e-22512917129Heat shock factor protein 1
5d5v_D8e-22512917129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.11e-126PREDICTED: heat stress transcription factor C-2b-like
SwissprotQ0DBL61e-111HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0A9DRA11e-132A0A0A9DRA1_ARUDO; Uncharacterized protein
STRINGGRMZM2G118047_P011e-121(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470